CRISPRone

CRISPRone report for GCA_013284985.1_ASM1328498v1

♦ Seq 1: JABTBW010000051.1 Pseudomonas aeruginosa strain 131709 13-1709_R1_(paired)_contig_51, whole genome shotgun sequence

⇒Summary: seq-len = 139428 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98180-106441 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 98180-99790 bp Gene: pfam13280:WYL Type: other Location: 99951-100967 bp Gene: COG2378:WYL Type: other Location: 101709-102551 bp Gene: unk Type: unknown Location: 102682-102969 bp Gene: unk Type: unknown Location: 103104-103682 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 104075-106441 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABTBW010000033.1 Pseudomonas aeruginosa strain 131709 13-1709_R1_(paired)_contig_33, whole genome shotgun sequence

⇒Summary: seq-len = 1397 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1394 bp Zoom in on locus 1 x2 x19 CRISPR array Location: 0-79 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 0-79 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 285-1394 bp Num of repeats: 19 Spacers: s2-s19 CRISPR array Location: 285-1394 bp Num of repeats: 19 Spacers: s2-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-79 bp]: array | spacers
           [Locus range 285-1394 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABTBW010000028.1 Pseudomonas aeruginosa strain 131709 13-1709_R1_(paired)_contig_28, whole genome shotgun sequence

⇒Summary: seq-len = 45581 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 154-9822 bp Zoom in on locus 1 x23 Gene: cd09718:cas1 Type: universal Location: 154-1128 bp Gene: COG1203:cas3 Type: Type-I Location: 1125-4355 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4413-5717 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5704-6687 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6698-7726 bp Gene: cd09739:cas6f Type: other Location: 7730-8293 bp CRISPR array Location: 8478-9822 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 8478-9822 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8478-9822 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JABTBW010000127.1 Pseudomonas aeruginosa strain 131709 13-1709_R1_(paired)_contig_127, whole genome shotgun sequence

⇒Summary: seq-len = 1434 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 114-1101 bp Zoom in on locus 1 x17 CRISPR array Location: 114-1101 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 114-1101 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 114-1101 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)