CRISPRone

CRISPRone report for GCA_013284995.1_ASM1328499v1

♦ Seq 1: JABTBV010000056.1 Pseudomonas aeruginosa strain 12866 12-866_S95_R1_001_(paired)_contig_56, whole genome shotgun sequence

⇒Summary: seq-len = 48299 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38482-48150 bp Zoom in on locus 1 x23 CRISPR array Location: 38482-39827 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 38482-39827 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 40011-40574 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40578-41606 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41617-42600 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42587-43891 bp Gene: COG1203:cas3 Type: Type-I Location: 43949-47179 bp Gene: cd09718:cas1 Type: universal Location: 47176-48150 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38482-39827 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABTBV010000079.1 Pseudomonas aeruginosa strain 12866 12-866_S95_R1_001_(paired)_contig_79, whole genome shotgun sequence

⇒Summary: seq-len = 2041 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 409-1938 bp Zoom in on locus 1 x26 CRISPR array Location: 409-1938 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 409-1938 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 409-1938 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABTBV010000047.1 Pseudomonas aeruginosa strain 12866 12-866_S95_R1_001_(paired)_contig_47, whole genome shotgun sequence

⇒Summary: seq-len = 63200 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62282-63209 bp Zoom in on locus 1 x16 CRISPR array Location: 62282-63209 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 62282-63209 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62282-63209 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JABTBV010000038.1 Pseudomonas aeruginosa strain 12866 12-866_S95_R1_001_(paired)_contig_38, whole genome shotgun sequence

⇒Summary: seq-len = 96012 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32981-41242 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 32981-35347 bp Gene: unk Type: unknown Location: 35740-36387 bp Gene: unk Type: unknown Location: 36453-36821 bp Gene: COG2378:WYL Type: other Location: 36871-37713 bp Gene: pfam13280:WYL Type: other Location: 38455-39471 bp Gene: mkCas0115:csx3 Type: other Location: 39632-41242 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)