CRISPRone

CRISPRone report for GCA_013285025.1_ASM1328502v1

♦ Seq 1: JABTBU010000017.1 Pseudomonas aeruginosa strain 09107 09-107_S96_R1_001_(paired)_contig_17, whole genome shotgun sequence

⇒Summary: seq-len = 424978 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 424291-424978 bp Zoom in on locus 1 x12 CRISPR array Location: 424291-424978 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 424291-424978 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 424291-424978 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABTBU010000045.1 Pseudomonas aeruginosa strain 09107 09-107_S96_R1_001_(paired)_contig_45, whole genome shotgun sequence

⇒Summary: seq-len = 76543 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54707-62968 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 54707-56317 bp Gene: pfam13280:WYL Type: other Location: 56478-57494 bp Gene: COG2378:WYL Type: other Location: 58236-59078 bp Gene: unk Type: unknown Location: 59128-59496 bp Gene: unk Type: unknown Location: 59562-60209 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 60602-62968 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABTBU010000022.1 Pseudomonas aeruginosa strain 09107 09-107_S96_R1_001_(paired)_contig_22, whole genome shotgun sequence

⇒Summary: seq-len = 50051 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38124-49642 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 38124-39469 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 38124-39469 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 39653-40216 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40220-41248 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41259-42242 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42229-43533 bp Gene: COG1203:cas3 Type: Type-I Location: 43591-46821 bp Gene: cd09718:cas1 Type: universal Location: 46818-47792 bp CRISPR array Location: 48054-49642 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 48054-49642 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38124-39469 bp]: array | spacers
           [Locus range 48054-49642 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)