CRISPRone

CRISPRone report for GCA_013309705.1_ASM1330970v1

♦ Seq 1: WXEV01000086.1 Pseudomonas aeruginosa strain PFL-P1 Scaffold_86, whole genome shotgun sequence

⇒Summary: seq-len = 264907 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26802-35887 bp Zoom in on locus 1 x20 CRISPR array Location: 26802-28098 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 26802-28098 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09725:cas2 Type: universal Location: 28278-28568 bp Gene: cd09721:cas1 Type: universal Location: 28578-29618 bp Gene: pfam01930:cas4 Type: Type-I Location: 29622-30254 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 30273-31142 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 31139-32932 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 32929-33603 bp Gene: cd09641:cas3HD Type: Type-I Location: 33653-35887 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26802-28098 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: WXEV01000056.1 Pseudomonas aeruginosa strain PFL-P1 Scaffold_56, whole genome shotgun sequence

⇒Summary: seq-len = 72984 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37461-47719 bp Zoom in on locus 1 x22 x7 CRISPR array Location: 37461-38749 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 37461-38749 bp Num of repeats: 22 Spacers: s1-s21 Gene: pfam09618:cas6f Type: Subtype-I-F Location: 38932-39495 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39499-40527 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40538-41521 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41508-42812 bp Gene: COG1203:cas3 Type: Type-I Location: 42870-46100 bp Gene: cd09718:cas1 Type: universal Location: 46097-47071 bp CRISPR array Location: 47332-47719 bp Num of repeats: 7 Spacers: s22-s27 CRISPR array Location: 47332-47719 bp Num of repeats: 7 Spacers: s22-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37461-38749 bp]: array | spacers
           [Locus range 47332-47719 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: WXEV01000093.1 Pseudomonas aeruginosa strain PFL-P1 Scaffold_93, whole genome shotgun sequence

⇒Summary: seq-len = 614918 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 127708-128215 bp Zoom in on locus 1 x9 CRISPR array Location: 127708-128215 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 127708-128215 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 127708-128215 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)