CRISPRone

CRISPRone report for GCA_013328535.1_ASM1332853v1

♦ Seq 1: JABUGN010000003.1 Pseudomonas aeruginosa strain MET04 ctg_MET04_3, whole genome shotgun sequence

⇒Summary: seq-len = 493898 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 382211-382840 bp Zoom in on locus 1 x11 CRISPR array Location: 382211-382840 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 382211-382840 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 382211-382840 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABUGN010000002.1 Pseudomonas aeruginosa strain MET04 ctg_MET04_2, whole genome shotgun sequence

⇒Summary: seq-len = 655632 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 87921-99668 bp Zoom in on locus 1 x28 x20 CRISPR array Location: 87921-89566 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 87921-89566 bp Num of repeats: 28 Spacers: s1-s27 Gene: cd09739:cas6f Type: other Location: 89750-90313 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 90317-91345 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 91356-92339 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 92326-93627 bp Gene: COG1203:cas3 Type: Type-I Location: 94038-97268 bp Gene: cd09718:cas1 Type: universal Location: 97265-98239 bp CRISPR array Location: 98500-99668 bp Num of repeats: 20 Spacers: s28-s46 CRISPR array Location: 98500-99668 bp Num of repeats: 20 Spacers: s28-s46 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 87921-89566 bp]: array | spacers
           [Locus range 98500-99668 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)