CRISPRone

CRISPRone report for GCA_013328565.1_ASM1332856v1

♦ Seq 1: JABUGO010000011.1 Pseudomonas aeruginosa strain LYON07 ctg_LYON07_11, whole genome shotgun sequence

⇒Summary: seq-len = 200021 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189588-199728 bp Zoom in on locus 1 x9 x18 CRISPR array Location: 189588-190097 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 189588-190097 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09739:cas6f Type: other Location: 190281-190844 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 190848-191876 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 191887-192870 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 192857-194161 bp Gene: COG1203:cas3 Type: Type-I Location: 194219-197449 bp Gene: cd09718:cas1 Type: universal Location: 197446-198420 bp CRISPR array Location: 198681-199728 bp Num of repeats: 18 Spacers: s9-s25 CRISPR array Location: 198681-199728 bp Num of repeats: 18 Spacers: s9-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 189588-190097 bp]: array | spacers
           [Locus range 198681-199728 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABUGO010000048.1 Pseudomonas aeruginosa strain LYON07 ctg_LYON07_48, whole genome shotgun sequence

⇒Summary: seq-len = 16142 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5952-15236 bp Zoom in on locus 1 x23 CRISPR array Location: 5952-7447 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 5952-7447 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09725:cas2 Type: universal Location: 7627-7917 bp Gene: cd09721:cas1 Type: universal Location: 7927-8967 bp Gene: pfam01930:cas4 Type: Type-I Location: 8971-9603 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 9622-10491 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 10488-12281 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 12278-12952 bp Gene: cd09641:cas3HD Type: Type-I Location: 13002-15236 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5952-7447 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABUGO010000002.1 Pseudomonas aeruginosa strain LYON07 ctg_LYON07_2, whole genome shotgun sequence

⇒Summary: seq-len = 416553 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 600-1348 bp Zoom in on locus 1 x13 CRISPR array Location: 600-1348 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 600-1348 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 600-1348 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)