CRISPRone

CRISPRone report for GCA_013328595.1_ASM1332859v1

♦ Seq 1: JABUGQ010000011.1 Pseudomonas aeruginosa strain LILL04 ctg_LILL04_11, whole genome shotgun sequence

⇒Summary: seq-len = 271677 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 228765-239350 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 228765-229634 bp Gene: pfam00078:RT Type: other Location: 234543-235811 bp Gene: unk Type: unknown Location: 235961-236359 bp Gene: unk Type: unknown Location: 236543-236722 bp Gene: cls000170:cas4 Type: Type-I Location: 237806-239350 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABUGQ010000004.1 Pseudomonas aeruginosa strain LILL04 ctg_LILL04_4, whole genome shotgun sequence

⇒Summary: seq-len = 559555 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244331-254842 bp Zoom in on locus 1 x13 x9 CRISPR array Location: 244331-245092 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 244331-245092 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 245157-245456 bp Gene: cd09719:cas1 Type: universal Location: 245453-246343 bp Gene: pfam08798:cas6e Type: other Location: 246370-246909 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 246956-247618 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 247620-248762 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 248772-249302 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 249299-250867 bp Gene: cd09641:cas3HD Type: Type-I Location: 250870-253551 bp CRISPR array Location: 254325-254842 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 254325-254842 bp Num of repeats: 9 Spacers: s13-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244331-245092 bp]: array | spacers
           [Locus range 254325-254842 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)