CRISPRone

CRISPRone report for GCA_013328725.1_ASM1332872v1

♦ Seq 1: JABUGV010000012.1 Pseudomonas aeruginosa strain BICH11 ctg_BICH11_12, whole genome shotgun sequence

⇒Summary: seq-len = 203675 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77336-87172 bp Zoom in on locus 1 x15 x7 CRISPR array Location: 77336-78204 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 77336-78204 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 78388-78951 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 78955-79983 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 79994-80848 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 80959-82263 bp Gene: COG1203:cas3 Type: Type-I Location: 82321-85551 bp Gene: cd09718:cas1 Type: universal Location: 85548-86522 bp CRISPR array Location: 86783-87172 bp Num of repeats: 7 Spacers: s15-s20 CRISPR array Location: 86783-87172 bp Num of repeats: 7 Spacers: s15-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 77336-78204 bp]: array | spacers
           [Locus range 86783-87172 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABUGV010000078.1 Pseudomonas aeruginosa strain BICH11 ctg_BICH11_78, whole genome shotgun sequence

⇒Summary: seq-len = 1288 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 865-1132 bp Zoom in on locus 1 x5 CRISPR array Location: 865-1132 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 865-1132 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 865-1132 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)