CRISPRone

CRISPRone report for GCA_013328775.1_ASM1332877v1

♦ Seq 1: JABUGW010000004.1 Pseudomonas aeruginosa strain BESA18 ctg_BESA18_4, whole genome shotgun sequence

⇒Summary: seq-len = 423642 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132114-142808 bp Zoom in on locus 1 x13 x12 CRISPR array Location: 132114-132875 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 132114-132875 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 132940-133239 bp Gene: COG1518:cas1 Type: universal Location: 133236-133685 bp Gene: COG1518:cas1 Type: universal Location: 133692-134126 bp Gene: pfam08798:cas6e Type: other Location: 134153-134692 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 134739-135401 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 135403-136545 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 136555-137085 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 137082-138650 bp Gene: cd09641:cas3HD Type: Type-I Location: 138653-141334 bp CRISPR array Location: 142109-142808 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 142109-142808 bp Num of repeats: 12 Spacers: s13-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 132114-132875 bp]: array | spacers
           [Locus range 142109-142808 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)