CRISPRone

CRISPRone report for GCA_013328785.1_ASM1332878v1

♦ Seq 1: JABUGY010000022.1 Pseudomonas aeruginosa strain AIX06 ctg_AIX06_22, whole genome shotgun sequence

⇒Summary: seq-len = 101063 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63310-73269 bp Zoom in on locus 1 x8 x16 CRISPR array Location: 63310-63758 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 63310-63758 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09739:cas6f Type: other Location: 63941-64504 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 64508-65536 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 65547-66530 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 66517-67821 bp Gene: COG1203:cas3 Type: Type-I Location: 67879-71109 bp Gene: cd09718:cas1 Type: universal Location: 71106-72080 bp CRISPR array Location: 72342-73269 bp Num of repeats: 16 Spacers: s8-s22 CRISPR array Location: 72342-73269 bp Num of repeats: 16 Spacers: s8-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63310-63758 bp]: array | spacers
           [Locus range 72342-73269 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABUGY010000016.1 Pseudomonas aeruginosa strain AIX06 ctg_AIX06_16, whole genome shotgun sequence

⇒Summary: seq-len = 181011 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 168-1398 bp Zoom in on locus 1 x21 CRISPR array Location: 168-1398 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 168-1398 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 168-1398 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)