CRISPRone

CRISPRone report for GCA_013341295.1_ASM1334129v1

♦ Seq 1: CP054472.1 Pseudomonas aeruginosa strain PAAK088 chromosome, complete genome

⇒Summary: seq-len = 6390212 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1556913-1557603 bp 2 Locus 2: 2909782-2921649 bp 3 Locus 3: 4051303-4053516 bp Zoom in on locus 1 x12 Zoom in on locus 2 x25 x25 Zoom in on locus 3 CRISPR array Location: 1556913-1557603 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 1556913-1557603 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 2909782-2911247 bp Num of repeats: 25 Spacers: s12-s35 CRISPR array Location: 2909782-2911247 bp Num of repeats: 25 Spacers: s12-s35 Gene: cd09739:cas6f Type: other Location: 2911431-2911994 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2911998-2913026 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2913037-2914020 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2914007-2915308 bp Gene: COG1203:cas3 Type: Type-I Location: 2915719-2918949 bp Gene: cd09718:cas1 Type: universal Location: 2918946-2919920 bp CRISPR array Location: 2920181-2921649 bp Num of repeats: 25 Spacers: s36-s59 CRISPR array Location: 2920181-2921649 bp Num of repeats: 25 Spacers: s36-s59 Gene: COG2378:WYL Type: other Location: 4051303-4052274 bp Gene: unk Type: unknown Location: 4052383-4053069 bp Gene: unk Type: unknown Location: 4053109-4053324 bp Gene: cd09693:cas5 Type: Type-I Location: 4053337-4053516 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1556913-1557603 bp]: array | spacers
           [Locus range 2909782-2911247 bp]: array | spacers
           [Locus range 2920181-2921649 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)