CRISPRone

CRISPRone report for GCA_013347245.1_ASM1334724v1

♦ Seq 1: CP054591.1 Pseudomonas aeruginosa strain CDN118 chromosome, complete genome

⇒Summary: seq-len = 6832395 bp; # of CRISPR array = 3; # of cas gene = 10  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3472318-3483896 bp 2 Locus 2: 4999038-4999965 bp 3 Locus 3: 6499777-6508038 bp Zoom in on locus 1 x28 x23 Zoom in on locus 2 x16 Zoom in on locus 3 CRISPR array Location: 3472318-3473967 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 3472318-3473967 bp Num of repeats: 28 Spacers: s1-s27 Gene: cd09718:cas1 Type: universal Location: 3474228-3475202 bp Gene: COG1203:cas3 Type: Type-I Location: 3475199-3478429 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3478487-3479791 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3479778-3480761 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 3480772-3481800 bp Gene: cd09739:cas6f Type: other Location: 3481804-3482367 bp CRISPR array Location: 3482552-3483896 bp Num of repeats: 23 Spacers: s28-s49 CRISPR array Location: 3482552-3483896 bp Num of repeats: 23 Spacers: s28-s49 CRISPR array Location: 4999038-4999965 bp Num of repeats: 16 Spacers: s50-s64 CRISPR array Location: 4999038-4999965 bp Num of repeats: 16 Spacers: s50-s64 Gene: COG1199:DinG Type: Subtype-IV-A Location: 6499777-6502143 bp Gene: unk Type: unknown Location: 6502536-6503114 bp Gene: unk Type: unknown Location: 6503258-6503413 bp Gene: COG2378:WYL Type: other Location: 6503667-6504509 bp Gene: pfam13280:WYL Type: other Location: 6505497-6506267 bp Gene: mkCas0115:csx3 Type: other Location: 6506428-6508038 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3472318-3473967 bp]: array | spacers
           [Locus range 3482552-3483896 bp]: array | spacers
           [Locus range 4999038-4999965 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)