CRISPRone

CRISPRone report for GCA_013376775.1_ASM1337677v1

♦ Seq 1: CP056774.1 Pseudomonas aeruginosa strain CDN129 chromosome, complete genome

⇒Summary: seq-len = 6770626 bp; # of CRISPR array = 3; # of cas gene = 10  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2621608-2633186 bp 2 Locus 2: 4083724-4084651 bp 3 Locus 3: 5971974-5980235 bp Zoom in on locus 1 x28 x23 Zoom in on locus 2 x16 Zoom in on locus 3 CRISPR array Location: 2621608-2623257 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 2621608-2623257 bp Num of repeats: 28 Spacers: s1-s27 Gene: cd09718:cas1 Type: universal Location: 2623518-2624492 bp Gene: COG1203:cas3 Type: Type-I Location: 2624489-2627719 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2627777-2629081 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2629068-2630051 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2630062-2631090 bp Gene: cd09739:cas6f Type: other Location: 2631094-2631657 bp CRISPR array Location: 2631842-2633186 bp Num of repeats: 23 Spacers: s28-s49 CRISPR array Location: 2631842-2633186 bp Num of repeats: 23 Spacers: s28-s49 CRISPR array Location: 4083724-4084651 bp Num of repeats: 16 Spacers: s50-s64 CRISPR array Location: 4083724-4084651 bp Num of repeats: 16 Spacers: s50-s64 Gene: mkCas0115:csx3 Type: other Location: 5971974-5973584 bp Gene: pfam13280:WYL Type: other Location: 5973745-5974761 bp Gene: COG2378:WYL Type: other Location: 5975503-5976345 bp Gene: unk Type: unknown Location: 5976599-5976754 bp Gene: unk Type: unknown Location: 5976898-5977476 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 5977869-5980235 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2621608-2623257 bp]: array | spacers
           [Locus range 2631842-2633186 bp]: array | spacers
           [Locus range 4083724-4084651 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)