CRISPRone

CRISPRone report for GCA_013395035.1_ASM1339503v1

♦ Seq 1: CP058332.1 Sphingomonas echinoides strain B18 chromosome, complete genome

⇒Summary: seq-len = 6490014 bp; # of CRISPR array = 4; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 198614-199783 bp 2 Locus 2: 3861389-3873200 bp Zoom in on locus 1 x20 Zoom in on locus 2 x10 x2 x24 CRISPR array Location: 198614-199783 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 198614-199783 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 3861389-3861967 bp Num of repeats: 10 Spacers: s20-s28 CRISPR array Location: 3861389-3861967 bp Num of repeats: 10 Spacers: s20-s28 CRISPR array Location: 3862061-3862151 bp Num of repeats: 2 Spacers: s29-s29 CRISPR array Location: 3862061-3862151 bp Num of repeats: 2 Spacers: s29-s29 Gene: cd09641:cas3HD Type: Type-I Location: 3862924-3865632 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 3865993-3867561 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 3867558-3868088 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 3868098-3869240 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 3869242-3869904 bp Gene: pfam08798:cas6e Type: other Location: 3869879-3870490 bp Gene: cd09719:cas1 Type: universal Location: 3870517-3871407 bp Gene: pfam09707:cas2 Type: universal Location: 3871404-3871703 bp CRISPR array Location: 3871768-3873200 bp Num of repeats: 24 Spacers: s30-s52 CRISPR array Location: 3871768-3873200 bp Num of repeats: 24 Spacers: s30-s52 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 198614-199783 bp]: array | spacers
           [Locus range 3861389-3861967 bp]: array | spacers
           [Locus range 3862061-3862151 bp]: array | spacers
           [Locus range 3871768-3873200 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)