CRISPRone

CRISPRone report for GCA_013402965.1_ASM1340296v1

♦ Seq 1: JACBNI010000014.1 Pseudomonas aeruginosa strain PAEM NODE_14_length_114880_cov_53.978506, whole genome shotgun sequence

⇒Summary: seq-len = 114880 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135-11235 bp Zoom in on locus 1 x23 x20 CRISPR array Location: 135-1484 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 135-1484 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 1744-2718 bp Gene: COG1203:cas3 Type: Type-I Location: 2715-5945 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6003-7307 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7294-8277 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8288-9316 bp Gene: cd09739:cas6f Type: other Location: 9320-9883 bp CRISPR array Location: 10067-11235 bp Num of repeats: 20 Spacers: s23-s41 CRISPR array Location: 10067-11235 bp Num of repeats: 20 Spacers: s23-s41 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 135-1484 bp]: array | spacers
           [Locus range 10067-11235 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACBNI010000003.1 Pseudomonas aeruginosa strain PAEM NODE_3_length_741923_cov_55.290825, whole genome shotgun sequence

⇒Summary: seq-len = 741923 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111271-112859 bp Zoom in on locus 1 x27 CRISPR array Location: 111271-112859 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 111271-112859 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111271-112859 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)