CRISPRone

CRISPRone report for GCA_013413795.1_ASM1341379v1

♦ Seq 1: JABJWJ010000002.1 Pseudomonas aeruginosa strain Pae1257-NDM1 NODE_2_length_503000_cov_29.1142, whole genome shotgun sequence

⇒Summary: seq-len = 503000 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 217697-228328 bp Zoom in on locus 1 x17 x7 CRISPR array Location: 217697-218701 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 217697-218701 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam09707:cas2 Type: universal Location: 218766-219065 bp Gene: cd09719:cas1 Type: universal Location: 219062-219952 bp Gene: pfam08798:cas6e Type: other Location: 219979-220518 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 220565-221227 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 221229-222371 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 222381-222911 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 222908-224476 bp Gene: cd09641:cas3HD Type: Type-I Location: 224479-227160 bp CRISPR array Location: 227934-228328 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 227934-228328 bp Num of repeats: 7 Spacers: s17-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 217697-218701 bp]: array | spacers
           [Locus range 227934-228328 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABJWJ010000040.1 Pseudomonas aeruginosa strain Pae1257-NDM1 NODE_40_length_48625_cov_23.0838, whole genome shotgun sequence

⇒Summary: seq-len = 48625 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36389-47615 bp Zoom in on locus 1 x25 x19 CRISPR array Location: 36389-37859 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 36389-37859 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09739:cas6f Type: other Location: 38108-38671 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38675-39703 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39714-40697 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40684-41988 bp Gene: COG1203:cas3 Type: Type-I Location: 42046-45276 bp Gene: cd09718:cas1 Type: universal Location: 45273-46247 bp CRISPR array Location: 46508-47615 bp Num of repeats: 19 Spacers: s25-s42 CRISPR array Location: 46508-47615 bp Num of repeats: 19 Spacers: s25-s42 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36389-37859 bp]: array | spacers
           [Locus range 46508-47615 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABJWJ010000009.1 Pseudomonas aeruginosa strain Pae1257-NDM1 NODE_9_length_209511_cov_32.2542, whole genome shotgun sequence

⇒Summary: seq-len = 209511 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190577-197702 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 190577-191575 bp Gene: pfam13280:WYL Type: other Location: 195549-196595 bp Gene: pfam13280:WYL Type: other Location: 196830-197702 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)