CRISPRone

CRISPRone report for GCA_013421135.1_ASM1342113v1

♦ Seq 1: JACCIL010000008.1 Pseudomonas aeruginosa strain NMI4927/14 NODE_8_length_416679_cov_34.202613, whole genome shotgun sequence

⇒Summary: seq-len = 416679 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 345-1094 bp Zoom in on locus 1 x13 CRISPR array Location: 345-1094 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 345-1094 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 345-1094 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACCIL010000017.1 Pseudomonas aeruginosa strain NMI4927/14 NODE_17_length_68885_cov_32.029742, whole genome shotgun sequence

⇒Summary: seq-len = 68885 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38223-48822 bp Zoom in on locus 1 x19 x10 CRISPR array Location: 38223-39331 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38223-39331 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 39514-40077 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40081-41109 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41120-42103 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42090-43391 bp Gene: COG1203:cas3 Type: Type-I Location: 43802-47032 bp Gene: cd09718:cas1 Type: universal Location: 47029-48003 bp CRISPR array Location: 48255-48822 bp Num of repeats: 10 Spacers: s19-s27 CRISPR array Location: 48255-48822 bp Num of repeats: 10 Spacers: s19-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38223-39331 bp]: array | spacers
           [Locus range 48255-48822 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)