CRISPRone

CRISPRone report for GCA_013421205.1_ASM1342120v1

♦ Seq 1: JACCIT010000027.1 Pseudomonas aeruginosa strain NMI18/09 NODE_27_length_39628_cov_58.909952, whole genome shotgun sequence

⇒Summary: seq-len = 39628 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 343-10010 bp Zoom in on locus 1 x29 Gene: cd09641:cas3HD Type: Type-I Location: 343-2577 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 2628-3302 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 3299-5062 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 5074-5943 bp Gene: pfam01930:cas4 Type: Type-I Location: 5962-6594 bp Gene: cd09721:cas1 Type: universal Location: 6598-7638 bp Gene: cd09725:cas2 Type: universal Location: 7648-7938 bp CRISPR array Location: 8120-10010 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 8120-10010 bp Num of repeats: 29 Spacers: s1-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8120-10010 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACCIT010000012.1 Pseudomonas aeruginosa strain NMI18/09 NODE_12_length_232405_cov_42.363930, whole genome shotgun sequence

⇒Summary: seq-len = 232405 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38273-49964 bp Zoom in on locus 1 x24 x23 CRISPR array Location: 38273-39682 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 38273-39682 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09739:cas6f Type: other Location: 39866-40429 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40433-41461 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41472-42455 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42442-43743 bp Gene: COG1203:cas3 Type: Type-I Location: 44154-47384 bp Gene: cd09718:cas1 Type: universal Location: 47381-48355 bp CRISPR array Location: 48616-49964 bp Num of repeats: 23 Spacers: s24-s45 CRISPR array Location: 48616-49964 bp Num of repeats: 23 Spacers: s24-s45 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38273-39682 bp]: array | spacers
           [Locus range 48616-49964 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)