CRISPRone

CRISPRone report for GCA_013421245.1_ASM1342124v1

♦ Seq 1: JACCIP010000019.1 Pseudomonas aeruginosa strain NMI2785/12 NODE_19_length_128076_cov_35.940437, whole genome shotgun sequence

⇒Summary: seq-len = 128076 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 126984-127732 bp Zoom in on locus 1 x13 CRISPR array Location: 126984-127732 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 126984-127732 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 126984-127732 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACCIP010000011.1 Pseudomonas aeruginosa strain NMI2785/12 NODE_11_length_276988_cov_31.273859, whole genome shotgun sequence

⇒Summary: seq-len = 276988 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20064-30663 bp Zoom in on locus 1 x10 x19 CRISPR array Location: 20064-20632 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 20064-20632 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 20883-21857 bp Gene: COG1203:cas3 Type: Type-I Location: 21854-25084 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 25495-26796 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 26783-27766 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27777-28805 bp Gene: cd09739:cas6f Type: other Location: 28809-29372 bp CRISPR array Location: 29556-30663 bp Num of repeats: 19 Spacers: s10-s27 CRISPR array Location: 29556-30663 bp Num of repeats: 19 Spacers: s10-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 20064-20632 bp]: array | spacers
           [Locus range 29556-30663 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)