CRISPRone

CRISPRone report for GCA_013421385.1_ASM1342138v1

♦ Seq 1: JACCII010000001.1 Pseudomonas aeruginosa strain NNPS244 NNPS244_contig_1, whole genome shotgun sequence

⇒Summary: seq-len = 487231 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 202391-212656 bp Zoom in on locus 1 x13 x5 CRISPR array Location: 202391-203151 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 202391-203151 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 203216-203515 bp Gene: cd09719:cas1 Type: universal Location: 203512-204402 bp Gene: pfam08798:cas6e Type: other Location: 204429-204968 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 205015-205677 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 205679-206821 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 206831-207361 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 207358-208926 bp Gene: cd09641:cas3HD Type: Type-I Location: 208929-211610 bp CRISPR array Location: 212384-212656 bp Num of repeats: 5 Spacers: s13-s16 CRISPR array Location: 212384-212656 bp Num of repeats: 5 Spacers: s13-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 202391-203151 bp]: array | spacers
           [Locus range 212384-212656 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACCII010000038.1 Pseudomonas aeruginosa strain NNPS244 NNPS244_contig_38, whole genome shotgun sequence

⇒Summary: seq-len = 48505 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 919-12145 bp Zoom in on locus 1 x19 x25 CRISPR array Location: 919-2027 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 919-2027 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09718:cas1 Type: universal Location: 2287-3261 bp Gene: COG1203:cas3 Type: Type-I Location: 3258-6488 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6546-7850 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7837-8820 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8831-9859 bp Gene: cd09739:cas6f Type: other Location: 9863-10426 bp CRISPR array Location: 10676-12145 bp Num of repeats: 25 Spacers: s19-s42 CRISPR array Location: 10676-12145 bp Num of repeats: 25 Spacers: s19-s42 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 919-2027 bp]: array | spacers
           [Locus range 10676-12145 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JACCII010000036.1 Pseudomonas aeruginosa strain NNPS244 NNPS244_contig_36, whole genome shotgun sequence

⇒Summary: seq-len = 50914 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32018-39203 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 32018-33076 bp Gene: pfam13280:WYL Type: other Location: 37050-38096 bp Gene: pfam13280:WYL Type: other Location: 38331-39203 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)