CRISPRone

CRISPRone report for GCA_013867645.1_ASM1386764v1

♦ Seq 1: JACEIX010000002.1 Pseudomonas aeruginosa strain s-3 Scaffolds_2_545334, whole genome shotgun sequence

⇒Summary: seq-len = 545334 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 496600-507099 bp Zoom in on locus 1 x16 x17 CRISPR array Location: 496600-497528 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 496600-497528 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09718:cas1 Type: universal Location: 497789-498763 bp Gene: COG1203:cas3 Type: Type-I Location: 498760-501990 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 502048-503352 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 503339-504322 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 504333-505361 bp Gene: cd09739:cas6f Type: other Location: 505365-505928 bp CRISPR array Location: 506111-507099 bp Num of repeats: 17 Spacers: s16-s31 CRISPR array Location: 506111-507099 bp Num of repeats: 17 Spacers: s16-s31 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 496600-497528 bp]: array | spacers
           [Locus range 506111-507099 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACEIX010000003.1 Pseudomonas aeruginosa strain s-3 Scaffolds_3_540477, whole genome shotgun sequence

⇒Summary: seq-len = 540477 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 539517-540324 bp Zoom in on locus 1 x14 CRISPR array Location: 539517-540324 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 539517-540324 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 539517-540324 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)