CRISPRone

CRISPRone report for GCA_013912465.1_ASM1391246v1

♦ Seq 1: JACEOT010000015.1 Pseudomonas aeruginosa strain PAL1.62 NODE_15_length_192368_cov_19.0552, whole genome shotgun sequence

⇒Summary: seq-len = 192368 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33477-44041 bp Zoom in on locus 1 x20 x13 CRISPR array Location: 33477-34645 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 33477-34645 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09718:cas1 Type: universal Location: 34905-35879 bp Gene: COG1203:cas3 Type: Type-I Location: 35876-39106 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 39164-40468 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40455-41438 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 41449-42477 bp Gene: cd09739:cas6f Type: other Location: 42481-43044 bp CRISPR array Location: 43294-44041 bp Num of repeats: 13 Spacers: s20-s31 CRISPR array Location: 43294-44041 bp Num of repeats: 13 Spacers: s20-s31 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 33477-34645 bp]: array | spacers
           [Locus range 43294-44041 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACEOT010000019.1 Pseudomonas aeruginosa strain PAL1.62 NODE_19_length_164799_cov_15.9275, whole genome shotgun sequence

⇒Summary: seq-len = 164799 bp; # of CRISPR array = 0; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80064-92807 bp 2 Locus 2: 111395-124485 bp Zoom in on locus 1 Zoom in on locus 2 Gene: COG0640:csa3 Type: Subtype-I-A Location: 80064-80981 bp Gene: unk Type: unknown Location: 81132-82181 bp Gene: mkCas0071:csa5gr11 Type: Subtype-I-A Location: 82224-84209 bp Gene: unk Type: unknown Location: 84334-84798 bp Gene: unk Type: unknown Location: 91272-92183 bp Gene: cd06127:DEDDh Type: Type-I Location: 92262-92807 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 111395-111697 bp Gene: cd09641:cas3HD Type: Type-I Location: 121379-123238 bp Gene: unk Type: unknown Location: 123054-123644 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 124180-124485 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)