CRISPRone

CRISPRone report for GCA_013912565.1_ASM1391256v1

♦ Seq 1: JACEOY010000032.1 Pseudomonas aeruginosa strain PAL1.56 NODE_32_length_52572_cov_13.9694, whole genome shotgun sequence

⇒Summary: seq-len = 52572 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32328-42913 bp Zoom in on locus 1 Gene: cls000170:cas4 Type: Type-I Location: 32328-33872 bp Gene: unk Type: unknown Location: 34956-35135 bp Gene: unk Type: unknown Location: 35319-35717 bp Gene: pfam00078:RT Type: other Location: 35867-37135 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 42044-42913 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACEOY010000021.1 Pseudomonas aeruginosa strain PAL1.56 NODE_21_length_99460_cov_14.0859, whole genome shotgun sequence

⇒Summary: seq-len = 99460 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16240-23028 bp Zoom in on locus 1 Gene: cd09696:cas3 Type: Subtype-I-U Location: 16240-19461 bp Gene: pfam13280:WYL Type: other Location: 19474-20382 bp Gene: unk Type: unknown Location: 20662-21552 bp Gene: unk Type: unknown Location: 21687-22004 bp Gene: mkCas0115:csx3 Type: other Location: 21997-23028 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JACEOY010000001.1 Pseudomonas aeruginosa strain PAL1.56 NODE_1_length_892012_cov_14.6208, whole genome shotgun sequence

⇒Summary: seq-len = 892012 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 676854-687366 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 676854-677372 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 676854-677372 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09641:cas3HD Type: Type-I Location: 678145-680826 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 680829-682397 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 682394-682924 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 682934-684076 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 684078-684740 bp Gene: pfam08798:cas6e Type: other Location: 684715-685326 bp Gene: cd09719:cas1 Type: universal Location: 685353-686243 bp Gene: pfam09707:cas2 Type: universal Location: 686240-686539 bp CRISPR array Location: 686604-687366 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 686604-687366 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 676854-677372 bp]: array | spacers
           [Locus range 686604-687366 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)