CRISPRone

CRISPRone report for GCA_013912575.1_ASM1391257v1

♦ Seq 1: JACEPA010000016.1 Pseudomonas aeruginosa strain PAL1.54 NODE_16_length_107314_cov_24.0387, whole genome shotgun sequence

⇒Summary: seq-len = 107314 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54076-64334 bp Zoom in on locus 1 x23 x6 CRISPR array Location: 54076-55424 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 54076-55424 bp Num of repeats: 23 Spacers: s1-s22 Gene: pfam09618:cas6f Type: Subtype-I-F Location: 55607-56170 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 56174-57202 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 57213-58196 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 58183-59487 bp Gene: COG1203:cas3 Type: Type-I Location: 59545-62775 bp Gene: cd09718:cas1 Type: universal Location: 62772-63746 bp CRISPR array Location: 64007-64334 bp Num of repeats: 6 Spacers: s23-s27 CRISPR array Location: 64007-64334 bp Num of repeats: 6 Spacers: s23-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 54076-55424 bp]: array | spacers
           [Locus range 64007-64334 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACEPA010000001.1 Pseudomonas aeruginosa strain PAL1.54 NODE_1_length_795914_cov_22.5137, whole genome shotgun sequence

⇒Summary: seq-len = 795914 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60311-71130 bp Zoom in on locus 1 x12 x15 CRISPR array Location: 60311-61012 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 60311-61012 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 61787-64468 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 64471-66039 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 66036-66566 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 66576-67718 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 67720-68382 bp Gene: pfam08798:cas6e Type: other Location: 68357-68968 bp Gene: cd09719:cas1 Type: universal Location: 68995-69771 bp Gene: pfam09707:cas2 Type: universal Location: 69882-70181 bp CRISPR array Location: 70246-71130 bp Num of repeats: 15 Spacers: s12-s25 CRISPR array Location: 70246-71130 bp Num of repeats: 15 Spacers: s12-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 60311-61012 bp]: array | spacers
           [Locus range 70246-71130 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JACEPA010000009.1 Pseudomonas aeruginosa strain PAL1.54 NODE_9_length_295328_cov_23.4542, whole genome shotgun sequence

⇒Summary: seq-len = 295328 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 224219-224726 bp Zoom in on locus 1 x9 CRISPR array Location: 224219-224726 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 224219-224726 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 224219-224726 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)