CRISPRone

CRISPRone report for GCA_013912665.1_ASM1391266v1

♦ Seq 1: JACEPH010000004.1 Pseudomonas aeruginosa strain PAL1.47 NODE_4_length_495905_cov_22.3559, whole genome shotgun sequence

⇒Summary: seq-len = 495905 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 280747-291259 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 280747-281265 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 280747-281265 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09641:cas3HD Type: Type-I Location: 282038-284719 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 284722-286290 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 286287-286817 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 286827-287969 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 287971-288633 bp Gene: pfam08798:cas6e Type: other Location: 288608-289219 bp Gene: cd09719:cas1 Type: universal Location: 289246-290136 bp Gene: pfam09707:cas2 Type: universal Location: 290133-290432 bp CRISPR array Location: 290497-291259 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 290497-291259 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 280747-281265 bp]: array | spacers
           [Locus range 290497-291259 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACEPH010000015.1 Pseudomonas aeruginosa strain PAL1.47 NODE_15_length_171896_cov_23.2608, whole genome shotgun sequence

⇒Summary: seq-len = 171896 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 108780-119365 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 108780-109649 bp Gene: pfam00078:RT Type: other Location: 114558-115826 bp Gene: unk Type: unknown Location: 115976-116374 bp Gene: unk Type: unknown Location: 116558-116737 bp Gene: cls000170:cas4 Type: Type-I Location: 117821-119365 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JACEPH010000021.1 Pseudomonas aeruginosa strain PAL1.47 NODE_21_length_99460_cov_22.7254, whole genome shotgun sequence

⇒Summary: seq-len = 99460 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16240-23028 bp Zoom in on locus 1 Gene: cd09696:cas3 Type: Subtype-I-U Location: 16240-19461 bp Gene: pfam13280:WYL Type: other Location: 19474-20382 bp Gene: unk Type: unknown Location: 20662-21552 bp Gene: unk Type: unknown Location: 21687-22004 bp Gene: mkCas0115:csx3 Type: other Location: 21997-23028 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)