CRISPRone

CRISPRone report for GCA_013912715.1_ASM1391271v1

♦ Seq 1: JACEPG010000011.1 Pseudomonas aeruginosa strain PAL1.48 NODE_11_length_247234_cov_20.5433, whole genome shotgun sequence

⇒Summary: seq-len = 247234 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 181404-192203 bp Zoom in on locus 1 x26 x12 CRISPR array Location: 181404-182932 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 181404-182932 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09718:cas1 Type: universal Location: 183193-184167 bp Gene: COG1203:cas3 Type: Type-I Location: 184164-187394 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 187452-188756 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 188743-189726 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 189737-190765 bp Gene: cd09739:cas6f Type: other Location: 190769-191332 bp CRISPR array Location: 191516-192203 bp Num of repeats: 12 Spacers: s26-s36 CRISPR array Location: 191516-192203 bp Num of repeats: 12 Spacers: s26-s36 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 181404-182932 bp]: array | spacers
           [Locus range 191516-192203 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACEPG010000005.1 Pseudomonas aeruginosa strain PAL1.48 NODE_5_length_393283_cov_20.5853, whole genome shotgun sequence

⇒Summary: seq-len = 393283 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 305496-314951 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 305496-307862 bp Gene: unk Type: unknown Location: 308255-308902 bp Gene: unk Type: unknown Location: 308926-310506 bp Gene: pfam13280:WYL Type: other Location: 310636-311511 bp Gene: unk Type: unknown Location: 311525-312106 bp Gene: unk Type: unknown Location: 312512-312793 bp Gene: unk Type: unknown Location: 312783-313064 bp Gene: pfam13280:WYL Type: other Location: 313875-314951 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)