CRISPRone

CRISPRone report for GCA_013912795.1_ASM1391279v1

♦ Seq 1: JACEPK010000012.1 Pseudomonas aeruginosa strain PAL1.44 NODE_12_length_184202_cov_22.845, whole genome shotgun sequence

⇒Summary: seq-len = 184202 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 143-1550 bp Zoom in on locus 1 x24 CRISPR array Location: 143-1550 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 143-1550 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 143-1550 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACEPK010000023.1 Pseudomonas aeruginosa strain PAL1.44 NODE_23_length_49254_cov_24.0807, whole genome shotgun sequence

⇒Summary: seq-len = 49254 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 150-10999 bp Zoom in on locus 1 x6 x16 Gene: cd09718:cas1 Type: universal Location: 150-1124 bp Gene: COG1203:cas3 Type: Type-I Location: 1121-4387 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4409-5713 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5700-6683 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6694-7722 bp Gene: cd09739:cas6f Type: other Location: 7726-8289 bp CRISPR array Location: 8474-8800 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 8474-8800 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 10072-10999 bp Num of repeats: 16 Spacers: s6-s20 CRISPR array Location: 10072-10999 bp Num of repeats: 16 Spacers: s6-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8474-8800 bp]: array | spacers
           [Locus range 10072-10999 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JACEPK010000015.1 Pseudomonas aeruginosa strain PAL1.44 NODE_15_length_119812_cov_23.5318, whole genome shotgun sequence

⇒Summary: seq-len = 119812 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 119037-119424 bp Zoom in on locus 1 x7 CRISPR array Location: 119037-119424 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 119037-119424 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 119037-119424 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)