CRISPRone

CRISPRone report for GCA_013912825.1_ASM1391282v1

♦ Seq 1: JACEPL010000001.1 Pseudomonas aeruginosa strain PAL1.43 NODE_1_length_831013_cov_27.2511, whole genome shotgun sequence

⇒Summary: seq-len = 831013 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 398714-399283 bp Zoom in on locus 1 x10 CRISPR array Location: 398714-399283 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 398714-399283 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 398714-399283 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACEPL010000018.1 Pseudomonas aeruginosa strain PAL1.43 NODE_18_length_115200_cov_26.7425, whole genome shotgun sequence

⇒Summary: seq-len = 115200 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42823-53140 bp Zoom in on locus 1 x25 x5 CRISPR array Location: 42823-44290 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 42823-44290 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09718:cas1 Type: universal Location: 44550-45524 bp Gene: COG1203:cas3 Type: Type-I Location: 45521-48751 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 48809-50113 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 50100-51083 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 51094-52122 bp Gene: cd09739:cas6f Type: other Location: 52126-52689 bp CRISPR array Location: 52873-53140 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 52873-53140 bp Num of repeats: 5 Spacers: s25-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 42823-44290 bp]: array | spacers
           [Locus range 52873-53140 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)