CRISPRone

CRISPRone report for GCA_013912895.1_ASM1391289v1

♦ Seq 1: JACEPP010000031.1 Pseudomonas aeruginosa strain PAL1.38 NODE_31_length_56521_cov_34.1876, whole genome shotgun sequence

⇒Summary: seq-len = 56521 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4391-14252 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 4391-6001 bp Gene: pfam13280:WYL Type: other Location: 6162-7178 bp Gene: unk Type: unknown Location: 8142-8381 bp Gene: unk Type: unknown Location: 8450-8629 bp Gene: unk Type: unknown Location: 8939-9472 bp Gene: pfam13280:WYL Type: other Location: 9487-10362 bp Gene: unk Type: unknown Location: 10412-10780 bp Gene: unk Type: unknown Location: 10846-11493 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 11886-14252 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACEPP010000003.1 Pseudomonas aeruginosa strain PAL1.38 NODE_3_length_512247_cov_33.1667, whole genome shotgun sequence

⇒Summary: seq-len = 512247 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 375297-375685 bp Zoom in on locus 1 x7 CRISPR array Location: 375297-375685 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 375297-375685 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 375297-375685 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JACEPP010000008.1 Pseudomonas aeruginosa strain PAL1.38 NODE_8_length_233526_cov_30.9538, whole genome shotgun sequence

⇒Summary: seq-len = 233526 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 50364-61033 bp Zoom in on locus 1 x15 x21 CRISPR array Location: 50364-51232 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 50364-51232 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 51415-51978 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 51982-53010 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 53021-54004 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 53991-55295 bp Gene: COG1203:cas3 Type: Type-I Location: 55353-58583 bp Gene: cd09718:cas1 Type: universal Location: 58580-59554 bp CRISPR array Location: 59806-61033 bp Num of repeats: 21 Spacers: s15-s34 CRISPR array Location: 59806-61033 bp Num of repeats: 21 Spacers: s15-s34 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 50364-51232 bp]: array | spacers
           [Locus range 59806-61033 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)