CRISPRone

CRISPRone report for GCA_013912965.1_ASM1391296v1

♦ Seq 1: JACEPS010000023.1 Pseudomonas aeruginosa strain PAL1.35 NODE_23_length_68699_cov_26.1202, whole genome shotgun sequence

⇒Summary: seq-len = 68699 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37498-48056 bp Zoom in on locus 1 x23 x11 CRISPR array Location: 37498-38846 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 37498-38846 bp Num of repeats: 23 Spacers: s1-s22 Gene: pfam09618:cas6f Type: Subtype-I-F Location: 39029-39592 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39596-40624 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40635-41618 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41605-42909 bp Gene: COG1203:cas3 Type: Type-I Location: 42967-46197 bp Gene: cd09718:cas1 Type: universal Location: 46194-47168 bp CRISPR array Location: 47429-48056 bp Num of repeats: 11 Spacers: s23-s32 CRISPR array Location: 47429-48056 bp Num of repeats: 11 Spacers: s23-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37498-38846 bp]: array | spacers
           [Locus range 47429-48056 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACEPS010000010.1 Pseudomonas aeruginosa strain PAL1.35 NODE_10_length_263076_cov_29.731, whole genome shotgun sequence

⇒Summary: seq-len = 263076 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7129-7636 bp Zoom in on locus 1 x9 CRISPR array Location: 7129-7636 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 7129-7636 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7129-7636 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)