CRISPRone

CRISPRone report for GCA_013913045.1_ASM1391304v1

♦ Seq 1: JACEPX010000006.1 Pseudomonas aeruginosa strain PAL1.28 NODE_6_length_321560_cov_25.5013, whole genome shotgun sequence

⇒Summary: seq-len = 321560 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 278645-289230 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 278645-279514 bp Gene: pfam00078:RT Type: other Location: 284423-285691 bp Gene: unk Type: unknown Location: 285841-286239 bp Gene: unk Type: unknown Location: 286423-286602 bp Gene: cls000170:cas4 Type: Type-I Location: 287686-289230 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACEPX010000002.1 Pseudomonas aeruginosa strain PAL1.28 NODE_2_length_435391_cov_22.9518, whole genome shotgun sequence

⇒Summary: seq-len = 435391 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132023-144060 bp Zoom in on locus 1 x29 x18 CRISPR array Location: 132023-133761 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 132023-133761 bp Num of repeats: 29 Spacers: s1-s28 Gene: pfam09707:cas2 Type: universal Location: 133826-134125 bp Gene: cd09719:cas1 Type: universal Location: 134122-135012 bp Gene: pfam08798:cas6e Type: other Location: 135039-135578 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 135625-136287 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 136289-137431 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 137441-137971 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 137968-139536 bp Gene: cd09641:cas3HD Type: Type-I Location: 139539-142220 bp CRISPR array Location: 142995-144060 bp Num of repeats: 18 Spacers: s29-s45 CRISPR array Location: 142995-144060 bp Num of repeats: 18 Spacers: s29-s45 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 132023-133761 bp]: array | spacers
           [Locus range 142995-144060 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)