CRISPRone

CRISPRone report for GCA_013913095.1_ASM1391309v1

♦ Seq 1: JACEPZ010000005.1 Pseudomonas aeruginosa strain PAL1.26 NODE_5_length_308552_cov_21.8999, whole genome shotgun sequence

⇒Summary: seq-len = 308552 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1350-1977 bp Zoom in on locus 1 x11 CRISPR array Location: 1350-1977 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 1350-1977 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1350-1977 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACEPZ010000070.1 Pseudomonas aeruginosa strain PAL1.26 NODE_70_length_10559_cov_2.82669, whole genome shotgun sequence

⇒Summary: seq-len = 10559 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 312-10216 bp Zoom in on locus 1 x12 x10 CRISPR array Location: 312-1000 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 312-1000 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 1249-1812 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1816-2844 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2855-3838 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3825-5129 bp Gene: COG1203:cas3 Type: Type-I Location: 5187-8417 bp Gene: cd09718:cas1 Type: universal Location: 8414-9388 bp CRISPR array Location: 9649-10216 bp Num of repeats: 10 Spacers: s12-s20 CRISPR array Location: 9649-10216 bp Num of repeats: 10 Spacers: s12-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 312-1000 bp]: array | spacers
           [Locus range 9649-10216 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)