CRISPRone

CRISPRone report for GCA_013913155.1_ASM1391315v1

♦ Seq 1: JACEQB010000004.1 Pseudomonas aeruginosa strain PAL1.23 NODE_4_length_299515_cov_20.4197, whole genome shotgun sequence

⇒Summary: seq-len = 299515 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 280885-291580 bp Zoom in on locus 1 x12 x13 CRISPR array Location: 280885-281585 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 280885-281585 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 282359-285040 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 285043-286611 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 286608-287138 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 287148-288290 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 288292-288954 bp Gene: pfam08798:cas6e Type: other Location: 288929-289540 bp Gene: COG1518:cas1 Type: universal Location: 289567-290001 bp Gene: COG1518:cas1 Type: universal Location: 290008-290457 bp Gene: pfam09707:cas2 Type: universal Location: 290454-290753 bp CRISPR array Location: 290818-291580 bp Num of repeats: 13 Spacers: s12-s23 CRISPR array Location: 290818-291580 bp Num of repeats: 13 Spacers: s12-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 280885-281585 bp]: array | spacers
           [Locus range 290818-291580 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)