CRISPRone

CRISPRone report for GCA_013913255.1_ASM1391325v1

♦ Seq 1: JACEQG010000003.1 Pseudomonas aeruginosa strain PAL1.18 NODE_3_length_796719_cov_25.2913, whole genome shotgun sequence

⇒Summary: seq-len = 796719 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 384026-385374 bp Zoom in on locus 1 x23 CRISPR array Location: 384026-385374 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 384026-385374 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 384026-385374 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACEQG010000014.1 Pseudomonas aeruginosa strain PAL1.18 NODE_14_length_106898_cov_25.2472, whole genome shotgun sequence

⇒Summary: seq-len = 106898 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32763-43013 bp Zoom in on locus 1 x13 x16 CRISPR array Location: 32763-33511 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 32763-33511 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09718:cas1 Type: universal Location: 33762-34736 bp Gene: COG1203:cas3 Type: Type-I Location: 34733-37963 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 38021-39325 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39312-40295 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40306-41334 bp Gene: cd09739:cas6f Type: other Location: 41338-41901 bp CRISPR array Location: 42085-43013 bp Num of repeats: 16 Spacers: s13-s27 CRISPR array Location: 42085-43013 bp Num of repeats: 16 Spacers: s13-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 32763-33511 bp]: array | spacers
           [Locus range 42085-43013 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)