CRISPRone

CRISPRone report for GCA_013913295.1_ASM1391329v1

♦ Seq 1: JACEQJ010000023.1 Pseudomonas aeruginosa strain PAL1.13 NODE_23_length_86064_cov_26.7214, whole genome shotgun sequence

⇒Summary: seq-len = 86064 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 52644-63971 bp Zoom in on locus 1 x27 x14 CRISPR array Location: 52644-54229 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 52644-54229 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09739:cas6f Type: other Location: 54413-54976 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 54980-56008 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 56019-57002 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 56989-58290 bp Gene: COG1203:cas3 Type: Type-I Location: 58701-61931 bp Gene: cd09718:cas1 Type: universal Location: 61928-62902 bp CRISPR array Location: 63163-63971 bp Num of repeats: 14 Spacers: s27-s39 CRISPR array Location: 63163-63971 bp Num of repeats: 14 Spacers: s27-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 52644-54229 bp]: array | spacers
           [Locus range 63163-63971 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACEQJ010000004.1 Pseudomonas aeruginosa strain PAL1.13 NODE_4_length_493986_cov_29.8296, whole genome shotgun sequence

⇒Summary: seq-len = 493986 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 382334-382963 bp Zoom in on locus 1 x11 CRISPR array Location: 382334-382963 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 382334-382963 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 382334-382963 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)