CRISPRone

CRISPRone report for GCA_013913385.1_ASM1391338v1

♦ Seq 1: JACEQN010000001.1 Pseudomonas aeruginosa strain PAL1.9 NODE_1_length_903207_cov_21.2268, whole genome shotgun sequence

⇒Summary: seq-len = 903207 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 177244-187755 bp Zoom in on locus 1 x13 x9 CRISPR array Location: 177244-178005 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 177244-178005 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 178070-178369 bp Gene: cd09719:cas1 Type: universal Location: 178366-179256 bp Gene: pfam08798:cas6e Type: other Location: 179283-179822 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 179869-180531 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 180533-181675 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 181685-182215 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 182212-183780 bp Gene: cd09641:cas3HD Type: Type-I Location: 183783-186464 bp CRISPR array Location: 187238-187755 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 187238-187755 bp Num of repeats: 9 Spacers: s13-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 177244-178005 bp]: array | spacers
           [Locus range 187238-187755 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACEQN010000009.1 Pseudomonas aeruginosa strain PAL1.9 NODE_9_length_243189_cov_22.7437, whole genome shotgun sequence

⇒Summary: seq-len = 243189 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123826-134411 bp Zoom in on locus 1 Gene: cls000170:cas4 Type: Type-I Location: 123826-125370 bp Gene: unk Type: unknown Location: 126454-126633 bp Gene: pfam00078:RT Type: other Location: 127365-128633 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 133542-134411 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)