CRISPRone

CRISPRone report for GCA_013913485.1_ASM1391348v1

♦ Seq 1: JACEQS010000004.1 Pseudomonas aeruginosa strain PAL1.4 NODE_4_length_498513_cov_15.7933, whole genome shotgun sequence

⇒Summary: seq-len = 498513 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 283355-293867 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 283355-283873 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 283355-283873 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09641:cas3HD Type: Type-I Location: 284646-287327 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 287330-288898 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 288895-289425 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 289435-290577 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 290579-291241 bp Gene: pfam08798:cas6e Type: other Location: 291216-291827 bp Gene: cd09719:cas1 Type: universal Location: 291854-292744 bp Gene: pfam09707:cas2 Type: universal Location: 292741-293040 bp CRISPR array Location: 293105-293867 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 293105-293867 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 283355-283873 bp]: array | spacers
           [Locus range 293105-293867 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACEQS010000026.1 Pseudomonas aeruginosa strain PAL1.4 NODE_26_length_85195_cov_17.5781, whole genome shotgun sequence

⇒Summary: seq-len = 85195 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42285-52870 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 42285-43154 bp Gene: pfam00078:RT Type: other Location: 48063-49331 bp Gene: unk Type: unknown Location: 49481-49879 bp Gene: unk Type: unknown Location: 50063-50242 bp Gene: cls000170:cas4 Type: Type-I Location: 51326-52870 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JACEQS010000008.1 Pseudomonas aeruginosa strain PAL1.4 NODE_8_length_244669_cov_15.2554, whole genome shotgun sequence

⇒Summary: seq-len = 244669 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32495-44097 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 32495-32797 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 41010-41315 bp Gene: unk Type: unknown Location: 41574-41735 bp Gene: unk Type: unknown Location: 41850-42440 bp Gene: cd09641:cas3HD Type: Type-I Location: 42256-44097 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)