CRISPRone

CRISPRone report for GCA_013913545.1_ASM1391354v1

♦ Seq 1: JACEQU010000023.1 Pseudomonas aeruginosa strain PAL1.2 NODE_23_length_113996_cov_32.1481, whole genome shotgun sequence

⇒Summary: seq-len = 113996 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 71822-82407 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 71822-72691 bp Gene: pfam00078:RT Type: other Location: 77600-78868 bp Gene: unk Type: unknown Location: 79018-79416 bp Gene: unk Type: unknown Location: 79600-79779 bp Gene: cls000170:cas4 Type: Type-I Location: 80863-82407 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACEQU010000027.1 Pseudomonas aeruginosa strain PAL1.2 NODE_27_length_97119_cov_23.218, whole genome shotgun sequence

⇒Summary: seq-len = 97119 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33282-43726 bp Zoom in on locus 1 x19 x12 CRISPR array Location: 33282-34390 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 33282-34390 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09718:cas1 Type: universal Location: 34650-35624 bp Gene: COG1203:cas3 Type: Type-I Location: 35621-38851 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 38909-40213 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40200-41183 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 41194-42222 bp Gene: cd09739:cas6f Type: other Location: 42226-42789 bp CRISPR array Location: 43039-43726 bp Num of repeats: 12 Spacers: s19-s29 CRISPR array Location: 43039-43726 bp Num of repeats: 12 Spacers: s19-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 33282-34390 bp]: array | spacers
           [Locus range 43039-43726 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JACEQU010000055.1 Pseudomonas aeruginosa strain PAL1.2 NODE_55_length_5066_cov_345.626, whole genome shotgun sequence

⇒Summary: seq-len = 5066 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3045-3326 bp Zoom in on locus 1 Gene: pfam09827:cas2 Type: universal Location: 3045-3326 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)