CRISPRone

CRISPRone report for GCA_014040785.1_ASM1404078v1

♦ Seq 1: JACEVC010000002.1 Pseudomonas aeruginosa strain PAL1.24 NODE_2_length_965648_cov_21.7327, whole genome shotgun sequence

⇒Summary: seq-len = 965648 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 199338-209790 bp Zoom in on locus 1 x18 x3 CRISPR array Location: 199338-200404 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 199338-200404 bp Num of repeats: 18 Spacers: s1-s17 Gene: pfam09707:cas2 Type: universal Location: 200469-200768 bp Gene: cd09719:cas1 Type: universal Location: 200765-201655 bp Gene: pfam08798:cas6e Type: other Location: 201682-202221 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 202268-202930 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 202932-204074 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 204084-204614 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 204611-206179 bp Gene: cd09641:cas3HD Type: Type-I Location: 206182-208863 bp CRISPR array Location: 209639-209790 bp Num of repeats: 3 Spacers: s18-s19 CRISPR array Location: 209639-209790 bp Num of repeats: 3 Spacers: s18-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 199338-200404 bp]: array | spacers
           [Locus range 209639-209790 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACEVC010000001.1 Pseudomonas aeruginosa strain PAL1.24 NODE_1_length_1461031_cov_22.6254, whole genome shotgun sequence

⇒Summary: seq-len = 1461031 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 386865-387853 bp Zoom in on locus 1 x17 CRISPR array Location: 386865-387853 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 386865-387853 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 386865-387853 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JACEVC010000005.1 Pseudomonas aeruginosa strain PAL1.24 NODE_5_length_312953_cov_23.9018, whole genome shotgun sequence

⇒Summary: seq-len = 312953 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 172809-174560 bp Zoom in on locus 1 Gene: mkCas0131:cas8b5 Type: Subtype-I-B Location: 172809-173825 bp Gene: cd06127:DEDDh Type: Type-I Location: 173955-174560 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)