CRISPRone

CRISPRone report for GCA_014040885.1_ASM1404088v1

♦ Seq 1: JACEVD010000012.1 Pseudomonas aeruginosa strain PAL1.16 NODE_12_length_195159_cov_25.081, whole genome shotgun sequence

⇒Summary: seq-len = 195159 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36388-46832 bp Zoom in on locus 1 x19 x12 CRISPR array Location: 36388-37496 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 36388-37496 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09718:cas1 Type: universal Location: 37756-38730 bp Gene: COG1203:cas3 Type: Type-I Location: 38727-41957 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42015-43319 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 43306-44289 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 44300-45328 bp Gene: cd09739:cas6f Type: other Location: 45332-45895 bp CRISPR array Location: 46145-46832 bp Num of repeats: 12 Spacers: s19-s29 CRISPR array Location: 46145-46832 bp Num of repeats: 12 Spacers: s19-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36388-37496 bp]: array | spacers
           [Locus range 46145-46832 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)