CRISPRone

CRISPRone report for GCA_014076625.1_ASM1407662v1

♦ Seq 1: JACGTC010000001.1 Pseudomonas aeruginosa strain AAK/M5 scaffold_1, whole genome shotgun sequence

⇒Summary: seq-len = 1217441 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 471955-472642 bp Zoom in on locus 1 x12 CRISPR array Location: 471955-472642 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 471955-472642 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 471955-472642 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACGTC010000014.1 Pseudomonas aeruginosa strain AAK/M5 scaffold_14, whole genome shotgun sequence

⇒Summary: seq-len = 76113 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37528-47483 bp Zoom in on locus 1 x12 x12 CRISPR array Location: 37528-38216 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 37528-38216 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 38399-38962 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38966-39994 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40005-40988 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40975-42279 bp Gene: COG1203:cas3 Type: Type-I Location: 42337-45567 bp Gene: cd09718:cas1 Type: universal Location: 45564-46538 bp CRISPR array Location: 46796-47483 bp Num of repeats: 12 Spacers: s12-s22 CRISPR array Location: 46796-47483 bp Num of repeats: 12 Spacers: s12-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37528-38216 bp]: array | spacers
           [Locus range 46796-47483 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JACGTC010000017.1 Pseudomonas aeruginosa strain AAK/M5 scaffold_17, whole genome shotgun sequence

⇒Summary: seq-len = 39304 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37969-39301 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 37969-38283 bp Gene: cls001593:casR Type: Type-I Location: 38344-38943 bp Gene: cls001593:casR Type: Type-I Location: 39074-39301 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)