CRISPRone

CRISPRone report for GCA_014145725.1_ASM1414572v1

♦ Seq 1: JACHQT010000001.1 Pseudomonas aeruginosa strain LVP39 newlvp01trimmed_contig_1, whole genome shotgun sequence

⇒Summary: seq-len = 6487315 bp; # of CRISPR array = 5; # of cas gene = 13  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2072117-2081830 bp 2 Locus 2: 2312946-2315147 bp 3 Locus 3: 4590077-4590403 bp 4 Locus 4: 4675426-4675514 bp 5 Locus 5: 5218947-5219215 bp Zoom in on locus 1 x7 x2 Zoom in on locus 2 Zoom in on locus 3 x6 Zoom in on locus 4 x2 Zoom in on locus 5 x5 CRISPR array Location: 2072117-2072512 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2072117-2072512 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09641:cas3HD Type: Type-I Location: 2073286-2073756 bp Gene: cd09639:cas3 Type: Type-I Location: 2073444-2074631 bp Gene: COG1203:cas3 Type: Type-I Location: 2074661-2075878 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 2075967-2077535 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 2077532-2078062 bp Gene: cd09646:cas7 Type: Subtype-I-E Location: 2078072-2078569 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 2078580-2079212 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 2079215-2079877 bp Gene: pfam08798:cas6e Type: other Location: 2080118-2080462 bp Gene: cd09719:cas1 Type: universal Location: 2080489-2081379 bp Gene: pfam09707:cas2 Type: universal Location: 2081376-2081675 bp CRISPR array Location: 2081740-2081830 bp Num of repeats: 2 Spacers: s7-s7 CRISPR array Location: 2081740-2081830 bp Num of repeats: 2 Spacers: s7-s7 Gene: cd09693:cas5 Type: Type-I Location: 2312946-2313098 bp Gene: unk Type: unknown Location: 2313137-2313352 bp Gene: unk Type: unknown Location: 2313415-2313606 bp Gene: unk Type: unknown Location: 2313705-2314067 bp Gene: COG2378:WYL Type: other Location: 2314176-2315147 bp CRISPR array Location: 4590077-4590403 bp Num of repeats: 6 Spacers: s8-s12 CRISPR array Location: 4590077-4590403 bp Num of repeats: 6 Spacers: s8-s12 CRISPR array Location: 4675426-4675514 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 4675426-4675514 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 5218947-5219215 bp Num of repeats: 5 Spacers: s14-s17 CRISPR array Location: 5218947-5219215 bp Num of repeats: 5 Spacers: s14-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2072117-2072512 bp]: array | spacers
           [Locus range 2081740-2081830 bp]: array | spacers
           [Locus range 4590077-4590403 bp]: array | spacers
           [Locus range 4675426-4675514 bp]: array | spacers
           [Locus range 5218947-5219215 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)