CRISPRone

CRISPRone report for GCA_014145765.1_ASM1414576v1

♦ Seq 1: JACHQV010000001.1 Pseudomonas aeruginosa strain LVP30 newlvp02trimmed_contig_1, whole genome shotgun sequence

⇒Summary: seq-len = 6364648 bp; # of CRISPR array = 3; # of cas gene = 12  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 535338-540609 bp 2 Locus 2: 4842488-4842811 bp 3 Locus 3: 5795518-5807124 bp Zoom in on locus 1 Zoom in on locus 2 x6 Zoom in on locus 3 x26 x13 Gene: cls001593:casR Type: Type-I Location: 535338-535571 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 535683-538073 bp Gene: unk Type: unknown Location: 538138-538995 bp Gene: unk Type: unknown Location: 539003-539572 bp Gene: COG4804:PD-DExK Type: other Location: 539569-540609 bp CRISPR array Location: 4842488-4842811 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 4842488-4842811 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5795518-5797073 bp Num of repeats: 26 Spacers: s6-s30 CRISPR array Location: 5795518-5797073 bp Num of repeats: 26 Spacers: s6-s30 Gene: pfam09707:cas2 Type: universal Location: 5797199-5797498 bp Gene: cd09719:cas1 Type: universal Location: 5797495-5798385 bp Gene: pfam08798:cas6e Type: other Location: 5798412-5798756 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 5798997-5799659 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 5799662-5800804 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 5800814-5801344 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 5801341-5802231 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 5802228-5802836 bp Gene: unk Type: unknown Location: 5802910-5803116 bp Gene: cd09639:cas3 Type: Type-I Location: 5803349-5805190 bp CRISPR array Location: 5806364-5807124 bp Num of repeats: 13 Spacers: s31-s42 CRISPR array Location: 5806364-5807124 bp Num of repeats: 13 Spacers: s31-s42 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4842488-4842811 bp]: array | spacers
           [Locus range 5795518-5797073 bp]: array | spacers
           [Locus range 5806364-5807124 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)