CRISPRone

CRISPRone report for GCA_014145775.1_ASM1414577v1

♦ Seq 1: JACHQW010000002.1 Pseudomonas aeruginosa strain LVP29 newlvp05_contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 1342626 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1262775-1273358 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 1262775-1263644 bp Gene: pfam00078:RT Type: other Location: 1268553-1269821 bp Gene: unk Type: unknown Location: 1269971-1270369 bp Gene: unk Type: unknown Location: 1270552-1270731 bp Gene: cls000170:cas4 Type: Type-I Location: 1271814-1273358 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACHQW010000001.1 Pseudomonas aeruginosa strain LVP29 newlvp05_contig_1, whole genome shotgun sequence

⇒Summary: seq-len = 2571039 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2151119-2151687 bp Zoom in on locus 1 x10 CRISPR array Location: 2151119-2151687 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2151119-2151687 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2151119-2151687 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)