CRISPRone

CRISPRone report for GCA_014155905.1_ASM1415590v1

♦ Seq 1: CP059995.1 Pseudomonas aeruginosa strain 401853 chromosome, complete genome

⇒Summary: seq-len = 7092673 bp; # of CRISPR array = 3; # of cas gene = 12  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2622334-2629456 bp 2 Locus 2: 3086056-3096258 bp 3 Locus 3: 3490710-3491637 bp 4 Locus 4: 5273851-5280639 bp Zoom in on locus 1 Zoom in on locus 2 x17 x11 Zoom in on locus 3 x16 Zoom in on locus 4 Gene: pfam13280:WYL Type: other Location: 2622334-2623329 bp Gene: pfam13280:WYL Type: other Location: 2627303-2628349 bp Gene: pfam13280:WYL Type: other Location: 2628584-2629456 bp CRISPR array Location: 3086056-3087044 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 3086056-3087044 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09739:cas6f Type: other Location: 3087227-3087790 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 3087794-3088822 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3088833-3089816 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3089803-3091107 bp Gene: COG1203:cas3 Type: Type-I Location: 3091165-3094395 bp Gene: cd09718:cas1 Type: universal Location: 3094392-3095366 bp CRISPR array Location: 3095631-3096258 bp Num of repeats: 11 Spacers: s17-s26 CRISPR array Location: 3095631-3096258 bp Num of repeats: 11 Spacers: s17-s26 CRISPR array Location: 3490710-3491637 bp Num of repeats: 16 Spacers: s27-s41 CRISPR array Location: 3490710-3491637 bp Num of repeats: 16 Spacers: s27-s41 Gene: mkCas0115:csx3 Type: other Location: 5273851-5274882 bp Gene: unk Type: unknown Location: 5275327-5276217 bp Gene: pfam13280:WYL Type: other Location: 5276497-5277405 bp Gene: cd09696:cas3 Type: Subtype-I-U Location: 5277418-5280639 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3086056-3087044 bp]: array | spacers
           [Locus range 3095631-3096258 bp]: array | spacers
           [Locus range 3490710-3491637 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)