CRISPRone

CRISPRone report for GCA_014204425.1_ASM1420442v1

♦ Seq 1: JACHLG010000012.1 Pseudomonas aeruginosa strain S00161 Ga0436321_12, whole genome shotgun sequence

⇒Summary: seq-len = 228363 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37525-48445 bp Zoom in on locus 1 x20 x20 CRISPR array Location: 37525-38693 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 37525-38693 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 38876-39439 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39443-40471 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40482-41465 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41452-42756 bp Gene: COG1203:cas3 Type: Type-I Location: 42814-46044 bp Gene: cd09718:cas1 Type: universal Location: 46041-47015 bp CRISPR array Location: 47276-48445 bp Num of repeats: 20 Spacers: s20-s38 CRISPR array Location: 47276-48445 bp Num of repeats: 20 Spacers: s20-s38 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37525-38693 bp]: array | spacers
           [Locus range 47276-48445 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACHLG010000002.1 Pseudomonas aeruginosa strain S00161 Ga0436321_02, whole genome shotgun sequence

⇒Summary: seq-len = 572514 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 289141-299498 bp Zoom in on locus 1 x12 x17 CRISPR array Location: 289141-289841 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 289141-289841 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 290613-293294 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 293297-294865 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 294862-295392 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 295402-296544 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 296546-297208 bp Gene: pfam08798:cas6e Type: other Location: 297183-297794 bp Gene: cd09719:cas1 Type: universal Location: 297821-298132 bp Gene: pfam09707:cas2 Type: universal Location: 298129-298428 bp CRISPR array Location: 298493-299498 bp Num of repeats: 17 Spacers: s12-s27 CRISPR array Location: 298493-299498 bp Num of repeats: 17 Spacers: s12-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 289141-289841 bp]: array | spacers
           [Locus range 298493-299498 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)