CRISPRone

CRISPRone report for GCA_014235295.1_ASM1423529v1

♦ Seq 1: JACJGW010000013.1 Pseudomonas aeruginosa strain PA0750 NODE_13_length_208081_cov_144.904, whole genome shotgun sequence

⇒Summary: seq-len = 208081 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 168-797 bp Zoom in on locus 1 x11 CRISPR array Location: 168-797 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 168-797 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 168-797 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACJGW010000024.1 Pseudomonas aeruginosa strain PA0750 NODE_24_length_50112_cov_111.782, whole genome shotgun sequence

⇒Summary: seq-len = 50112 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38198-49945 bp Zoom in on locus 1 x25 x23 CRISPR array Location: 38198-39663 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 38198-39663 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09739:cas6f Type: other Location: 39847-40410 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40414-41442 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41453-42436 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42423-43724 bp Gene: COG1203:cas3 Type: Type-I Location: 44135-47365 bp Gene: cd09718:cas1 Type: universal Location: 47362-48336 bp CRISPR array Location: 48597-49945 bp Num of repeats: 23 Spacers: s25-s46 CRISPR array Location: 48597-49945 bp Num of repeats: 23 Spacers: s25-s46 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38198-39663 bp]: array | spacers
           [Locus range 48597-49945 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)