CRISPRone

CRISPRone report for GCA_014235305.1_ASM1423530v1

♦ Seq 1: JACJGU010000010.1 Pseudomonas aeruginosa strain PA0750 NODE_10_length_210198_cov_130.312, whole genome shotgun sequence

⇒Summary: seq-len = 210198 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 71715-82300 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 71715-72584 bp Gene: pfam00078:RT Type: other Location: 77493-78761 bp Gene: unk Type: unknown Location: 78911-79309 bp Gene: unk Type: unknown Location: 79493-79672 bp Gene: cls000170:cas4 Type: Type-I Location: 80756-82300 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACJGU010000004.1 Pseudomonas aeruginosa strain PA0750 NODE_4_length_420745_cov_105.43, whole genome shotgun sequence

⇒Summary: seq-len = 420745 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113396-125434 bp Zoom in on locus 1 x18 x29 CRISPR array Location: 113396-114462 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 113396-114462 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09641:cas3HD Type: Type-I Location: 115236-117917 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 117920-119488 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 119485-120015 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 120025-121167 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 121169-121831 bp Gene: pfam08798:cas6e Type: other Location: 121806-122417 bp Gene: cd09719:cas1 Type: universal Location: 122444-123334 bp Gene: pfam09707:cas2 Type: universal Location: 123331-123630 bp CRISPR array Location: 123695-125434 bp Num of repeats: 29 Spacers: s18-s45 CRISPR array Location: 123695-125434 bp Num of repeats: 29 Spacers: s18-s45 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113396-114462 bp]: array | spacers
           [Locus range 123695-125434 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)