CRISPRone

CRISPRone report for GCA_014236775.1_ASM1423677v1

♦ Seq 1: CP028361.1 Clostridioides difficile strain DSM 105001 chromosome, complete genome

⇒Summary: seq-len = 4198599 bp; # of CRISPR array = 12; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1208485-1208905 bp 2 Locus 2: 1558527-1558758 bp 3 Locus 3: 1669078-1669770 bp 4 Locus 4: 1760499-1764969 bp 5 Locus 5: 1902827-1903977 bp 6 Locus 6: 2244616-2244776 bp 7 Locus 7: 2625934-2626550 bp 8 Locus 8: 2789822-2798143 bp 9 Locus 9: 2871426-2871783 bp 10 Locus 10: 3374010-3385147 bp 11 Locus 11: 3607582-3607675 bp Zoom in on locus 1 x7 Zoom in on locus 2 x4 Zoom in on locus 3 x11 Zoom in on locus 4 x7 x4 x7 Zoom in on locus 5 x18 Zoom in on locus 6 x3 Zoom in on locus 7 x10 Zoom in on locus 8 Zoom in on locus 9 x6 Zoom in on locus 10 x25 Zoom in on locus 11 x2 CRISPR array Location: 1208485-1208905 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1208485-1208905 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1558527-1558758 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 1558527-1558758 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 1669078-1669770 bp Num of repeats: 11 Spacers: s10-s19 CRISPR array Location: 1669078-1669770 bp Num of repeats: 11 Spacers: s10-s19 CRISPR array Location: 1760499-1760923 bp Num of repeats: 7 Spacers: s20-s25 CRISPR array Location: 1760499-1760923 bp Num of repeats: 7 Spacers: s20-s25 CRISPR array Location: 1762527-1762751 bp Num of repeats: 4 Spacers: s26-s28 CRISPR array Location: 1762527-1762751 bp Num of repeats: 4 Spacers: s26-s28 CRISPR array Location: 1764544-1764969 bp Num of repeats: 7 Spacers: s29-s34 CRISPR array Location: 1764544-1764969 bp Num of repeats: 7 Spacers: s29-s34 CRISPR array Location: 1902827-1903977 bp Num of repeats: 18 Spacers: s35-s51 CRISPR array Location: 1902827-1903977 bp Num of repeats: 18 Spacers: s35-s51 CRISPR array Location: 2244616-2244776 bp Num of repeats: 3 Spacers: s52-s53 CRISPR array Location: 2244616-2244776 bp Num of repeats: 3 Spacers: s52-s53 CRISPR array Location: 2625934-2626550 bp Num of repeats: 10 Spacers: s54-s62 CRISPR array Location: 2625934-2626550 bp Num of repeats: 10 Spacers: s54-s62 Gene: cd09641:cas3HD Type: Type-I Location: 2789822-2792230 bp Gene: cd09693:cas5 Type: Type-I Location: 2792257-2793054 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2793070-2794086 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2794106-2795581 bp Gene: pfam01881:cas6 Type: other Location: 2795586-2796323 bp Gene: unk Type: unknown Location: 2796424-2796600 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2797034-2798143 bp CRISPR array Location: 2871426-2871783 bp Num of repeats: 6 Spacers: s63-s67 CRISPR array Location: 2871426-2871783 bp Num of repeats: 6 Spacers: s63-s67 CRISPR array Location: 3374010-3375609 bp Num of repeats: 25 Spacers: s68-s91 CRISPR array Location: 3374010-3375609 bp Num of repeats: 25 Spacers: s68-s91 Gene: cd09725:cas2 Type: universal Location: 3375793-3376059 bp Gene: cd09722:cas1 Type: universal Location: 3376062-3377042 bp Gene: pfam01930:cas4 Type: Type-I Location: 3377045-3377563 bp Gene: COG1203:cas3 Type: Type-I Location: 3377611-3379932 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3379943-3380644 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3380646-3381560 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3381562-3383412 bp Gene: pfam01881:cas6 Type: other Location: 3383418-3384212 bp Gene: pfam13280:WYL Type: other Location: 3384233-3385147 bp CRISPR array Location: 3607582-3607675 bp Num of repeats: 2 Spacers: s92-s92 CRISPR array Location: 3607582-3607675 bp Num of repeats: 2 Spacers: s92-s92 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1208485-1208905 bp]: array | spacers
           [Locus range 1558527-1558758 bp]: array | spacers
           [Locus range 1669078-1669770 bp]: array | spacers
           [Locus range 1760499-1760923 bp]: array | spacers
           [Locus range 1762527-1762751 bp]: array | spacers
           [Locus range 1764544-1764969 bp]: array | spacers
           [Locus range 1902827-1903977 bp]: array | spacers
           [Locus range 2244616-2244776 bp]: array | spacers
           [Locus range 2625934-2626550 bp]: array | spacers
           [Locus range 2871426-2871783 bp]: array | spacers
           [Locus range 3374010-3375609 bp]: array | spacers
           [Locus range 3607582-3607675 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)