CRISPRone

CRISPRone report for GCA_014333435.1_PA14-UM

♦ Seq 1: JACFYT010000224.1 Pseudomonas aeruginosa strain PA14-UM PA14-UM_224, whole genome shotgun sequence

⇒Summary: seq-len = 9880 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9683-9892 bp Zoom in on locus 1 x4 CRISPR array Location: 9683-9892 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 9683-9892 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9683-9892 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACFYT010000398.1 Pseudomonas aeruginosa strain PA14-UM PA14-UM_398, whole genome shotgun sequence

⇒Summary: seq-len = 47049 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36556-47060 bp Zoom in on locus 1 x13 x19 CRISPR array Location: 36556-37304 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 36556-37304 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09739:cas6f Type: other Location: 37553-38116 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38120-39148 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39159-40142 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40129-41433 bp Gene: COG1203:cas3 Type: Type-I Location: 41491-44721 bp Gene: cd09718:cas1 Type: universal Location: 44718-45692 bp CRISPR array Location: 45953-47060 bp Num of repeats: 19 Spacers: s13-s30 CRISPR array Location: 45953-47060 bp Num of repeats: 19 Spacers: s13-s30 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36556-37304 bp]: array | spacers
           [Locus range 45953-47060 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)